Everything Bagel Breakfast Casserole

Featured in: Comfort Food Cravings

This comforting breakfast casserole combines the rich flavors of everything bagels, soft cheeses, and smoked salmon for a delightful brunch centerpiece. Cubed bagels soak up a creamy egg mixture highlighted by mozzarella, cheddar, and cream cheese. Diced red onion, juicy cherry tomatoes, and briny capers add contrast alongside aromatic chives and optional dill. After baking to golden perfection, the dish yields six hearty servings, ideal for crowd-pleasing mornings or leisurely gatherings. Enjoy with sour cream or Greek yogurt and pair with coffee or mimosa for a satisfying start to the day.

Updated on Thu, 16 Oct 2025 18:31:33 GMT
Golden-brown Everything Bagel Breakfast Casserole, bubbly cheese, tempting salmon, fresh green chives. Save
Golden-brown Everything Bagel Breakfast Casserole, bubbly cheese, tempting salmon, fresh green chives. | toastytongs.com

This savory Everything Bagel Breakfast Casserole is the ultimate brunch hero for busy mornings. With cubes of everything bagel tucked between pockets of cream cheese, smoked salmon, tangy capers, red onion, and melty cheddar, it delivers bagel shop flavors without any stress. Whether you are feeding a weekend crowd or prepping a make-ahead morning meal, this comforting bake packs in everything you love about classic bagels—all in one dish.

When I first made this on a holiday morning, the entire house filled with the smell of everything bagels and cheese bubbling in the oven. Now, this casserole is my top request for cozy brunches.

Ingredients

  • Everything bagels cubed: These give the dish substance with poppy and sesame seeds for irresistible crunch. Choose fresh but not super soft bagels for best texture
  • Large eggs: The heart of your custard base. Go for pasture raised eggs if possible for richer flavor
  • Whole milk: Balances richness with moisture. Use a high quality milk for best taste
  • Cream cheese softened and cubed: Adds that signature bagel shop creaminess. Let it come to room temperature so it melts in
  • Shredded cheddar cheese: Brings depth and sharpness. Choose a real block and shred yourself if you can
  • Shredded mozzarella cheese: Melts smooth for extra stretch. Use whole milk mozzarella
  • Red onion finely diced: Offers bite and aromatic depth. Look for firm onions with no sprouting
  • Cherry tomatoes halved: Burst with sweet acidity. Pick ripe but not mushy tomatoes
  • Fresh chives chopped: Bring color and mild onion flavor. Fresh snipped chives brighten the flavor
  • Capers drained: Little pops of salt and tang. Go for brined or salt packed capers
  • Smoked salmon torn into pieces: Silky texture and smoky flavor. Use high quality lox or nova for best results
  • Kosher salt: Essential for seasoning. Use flaky kosher salt for more even seasoning
  • Freshly ground black pepper: Adds gentle kick. Fresh cracked pepper is best
  • Dried dill optional: For a herbaceous note. Use only if you love dill

Instructions

Preheat and Prep:
Prepare your oven by preheating to 350 degrees Fahrenheit. Use a dab of butter or a quick spray to grease a 9 by 13 inch baking dish so nothing sticks
Layer the Bagels:
Scatter your bagel cubes across the bottom of your dish. Make sure the bottom is evenly covered but avoid packing them tight. This helps everything soak up the custard
Add Mix Ins:
Nestle the cubed cream cheese among the bagels. Scatter smoked salmon over next then layer with red onion cherry tomatoes chives and capers. Distribute everything so you get a bit in every bite
Mix the Custard:
In a bowl whisk eggs whole milk kosher salt black pepper and optional dried dill until no streaks remain. Take your time for a smooth base
Soak the Casserole:
Pour your egg mixture evenly over the layered bagels. Press down gently with a spatula or clean hands until most cubes feel saturated. Pause here for at least fifteen minutes on the counter or cover and chill overnight in the fridge for even creamier texture
Top with Cheese:
Sprinkle both cheddar and mozzarella evenly on top. This creates a golden melty crust
Bake:
Slide your casserole uncovered into the preheated oven. Bake for forty to forty five minutes. Check for a set center and deep gold on top. If the top browns too quickly tent with foil after thirty minutes
Cool and Garnish:
Let the casserole rest for about ten minutes before slicing so it sets up nicely. Scatter extra chives if you want a pop of color
Warm, savory Everything Bagel Breakfast Casserole with melted cheese, ready to be served. Save
Warm, savory Everything Bagel Breakfast Casserole with melted cheese, ready to be served. | toastytongs.com

My favorite part of this recipe is scattering dollops of cream cheese between the bagels Those melty tangy pockets remind me of Saturday mornings growing up when my mom always served bagels with extra thick spreads There is something nostalgic and comforting every single time I make it

Storage Tips

This casserole keeps covered in the fridge for up to three days Reheat in a low oven to revive its texture Individual portions can be microwaved for quick weekday breakfasts

Ingredient Substitutions

Swap out smoked salmon for turkey bacon or breakfast sausage if desired If you need to go vegetarian just add sautéed mushrooms or baby spinach Steer clear of bagels with sweet toppings like cinnamon sugar for this version

Serving Suggestions

Serve cut in thick squares with a dollop of sour cream or creamy Greek yogurt Fresh fruit on the side and a crisp mimosa balance the meal beautifully It also works as a hearty lunch with a bright green salad

Cultural and Seasonal Notes

Everything bagel seasoning is inspired by New York style deli bagels The casserole version is perfect for holiday brunches Mother’s Day or whenever you crave big comforting flavors Swap tomatoes for roasted butternut squash in the fall or add fresh dill and snipped spring onions to celebrate spring produce

Recipe Notes For Success

If your bagels are a day or two old they will soak up the custard better and hold their shape The overnight rest in the fridge gives the richest result Do not skimp on the resting time before baking or you risk a soggy base

Freezer Meal Conversion

To freeze bake the casserole until just set Cool completely Wrap tightly and freeze up to one month Thaw overnight in the fridge before gently reheating covered at three hundred degrees Fahrenheit

Close up shot of a cheesy Everything Bagel Breakfast Casserole, baked until crusty. Save
Close up shot of a cheesy Everything Bagel Breakfast Casserole, baked until crusty. | toastytongs.com

This breakfast casserole brings New York deli flavors to your table without fuss. Enjoy every bite, whether for a special brunch or an easy weekday meal.

Recipe FAQ

Can I make this dish ahead of time?

Yes, assemble the casserole the night before, refrigerate, and bake fresh in the morning for best texture and flavor.

Are there substitutions for smoked salmon?

Try cooked turkey bacon or sausage, or swap in sautéed mushrooms and spinach for a vegetarian alternative.

Which cheeses work best in this bake?

Cheddar and mozzarella melt beautifully and balance the tang of cream cheese. Feel free to use your favorite blends.

What side dishes complement this casserole?

Pair with fresh fruit, green salad, or beverages like mimosa and cold brew coffee for a complete brunch experience.

Does this dish contain common allergens?

It includes wheat, eggs, dairy, and fish. Check ingredient labels—bagels may have sesame seeds as well.

Everything Bagel Breakfast Casserole

Savory morning bake with everything bagels, cheeses, eggs, smoked salmon. Perfect for brunch or early gatherings.

Prep duration
20 min
Cook duration
45 min
Complete duration
65 min
Created By Daniel Brooks


Skill Level Easy

Heritage American

Output 6 Portions

Dietary considerations None specified

Components

Bread Base

01 4 everything bagels, cut into 1-inch cubes

Dairy & Eggs

01 8 large eggs
02 2 cups whole milk
03 1/2 cup cream cheese, softened and cubed
04 1 cup shredded cheddar cheese
05 1/2 cup shredded mozzarella cheese

Vegetables & Aromatics

01 1/2 cup red onion, finely diced
02 1/2 cup cherry tomatoes, halved
03 2 tablespoons fresh chives, chopped
04 1 tablespoon capers, drained

Protein

01 4 ounces smoked salmon, torn into bite-sized pieces

Seasoning

01 1 teaspoon kosher salt
02 1/2 teaspoon freshly ground black pepper
03 1 teaspoon dried dill (optional)

Directions

Phase 01

Preheat and Prepare Dish: Preheat oven to 350°F (175°C); grease a 9x13-inch baking dish thoroughly.

Phase 02

Layer Bagel Cubes: Distribute the bagel cubes evenly in the greased baking dish, ensuring complete coverage.

Phase 03

Add Fillings: Scatter cream cheese cubes, smoked salmon, red onion, cherry tomatoes, chives, and capers evenly over the bread base.

Phase 04

Prepare Custard: In a large mixing bowl, whisk together eggs, whole milk, kosher salt, black pepper, and dill if using, until fully combined.

Phase 05

Combine Casserole: Pour the egg mixture evenly over the layered ingredients. Press down gently on the bagel cubes to help them soak up the liquid.

Phase 06

Top with Cheese: Evenly sprinkle cheddar and mozzarella cheese across the surface.

Phase 07

Rest or Refrigerate: Allow the casserole to rest for at least 15 minutes at room temperature or refrigerate overnight for optimal texture.

Phase 08

Bake: Transfer to the oven and bake for 40–45 minutes until set in the center and golden brown on top.

Phase 09

Cool and Serve: Let cool briefly before slicing; garnish with additional chives as desired.

Tools needed

  • 9x13-inch baking dish
  • Mixing bowls
  • Whisk
  • Knife and cutting board
  • Measuring cups and spoons

Allergy details

Review each ingredient for potential allergens and consult with a healthcare professional if you're uncertain.
  • Contains wheat (bagels), eggs, milk (cheese, milk, cream cheese), fish (smoked salmon), and possibly sesame seeds from bagels. Verify all ingredient labels for further allergens.

Nutritional information (per portion)

These values are approximate guidelines only and shouldn't replace professional medical guidance.
  • Energy: 410
  • Fats: 21 g
  • Carbohydrates: 36 g
  • Proteins: 20 g